Welcome to Res-Dom

Res-Dom: predict protein domain boundary from sequence alone using deep residual network and Bi-LSTM.

Required tools

Package                Version             
---------------------- --------------------
esm                    0.1.0               
Keras                  2.2.0               
numpy                  1.19.1              
tensorflow-gpu         1.8.0               
torch                  1.6.0 

Dataset

The training data was collected from CATH(V4.1) and the independent testing datasets were derived from the CATH(V4.3).

The training scripts

python ./model_train/model_train.py

Note: the training data path should change to your local path.

The test script

cd sample/
python predict.py

Support or Contact

If you have any questions, comments, or would like to report a bug, please file a Github issue or contact me at 1762276284@qq.com.